PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC24680_p1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bHLH
Protein Properties Length: 174aa    MW: 19482.5 Da    PI: 10.2807
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC24680_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH12.70.00024420117
                 CHHHHHHHHHHHHHHHH CS
          HLH  1 rrrahnerErrRRdriN 17
                 +r++h ++Er+RR+++N
  RrC24680_p1  4 QRMTHIAVERNRRRQMN 20
                 79**************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.88E-7350IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 174 aa     Download sequence    Send to blast
METQRMTHIA VERNRRRQMN GDQASIVGGA IDFLKILEQH LQSLEAQKMT QQTSKLRIDA  60
TVVERHVNLK IQCCQRKQGQ LLRSIILLEK RGFTVLHLSI TSPCSTSVSY SFNLKPQDRL  120
YVGHVSTILI GKPKTSGRKI ARNVLTKATE VEASATAESD TTELPEIVKT AQEA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1415RMTHIAVERNRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB6784345e-34AB678434.1 Arabidopsis thaliana mRNA for basic helix-loop-helix DNA-binding superfamily protein, complete cds.
GenBankAC0053105e-34AC005310.3 Arabidopsis thaliana chromosome 2 clone F19D11 map CIC06C03, complete sequence.
GenBankAF4886025e-34AF488602.1 Arabidopsis thaliana clone bHLH070 putative bHLH transcription factor mRNA, partial sequence.
GenBankCP0026855e-34CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013688176.12e-63PREDICTED: transcription factor bHLH70-like
SwissprotO810371e-53BH070_ARATH; Transcription factor bHLH70
TrEMBLA0A078GQE31e-62A0A078GQE3_BRANA; BnaC04g51620D protein
TrEMBLA0A0D3C6M41e-62A0A0D3C6M4_BRAOL; Uncharacterized protein
STRINGBra040483.1-P5e-61(Brassica rapa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46810.12e-54bHLH family protein